Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_456

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8824 and 8825 are separated by 461 nucleotides mRNA_456: 8824 - Hypothetical Protein, at 1,062,231 to 1,064,186 8824 mRNA_457: 8825 - K14963 WDR5, SWD3, CPS30 COMPASS component SWD3, at 1,064,648 to 1,065,964 8825

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,061,243 - -0.1
1,061,244 + +0.8
1,061,327 - -0.1
1,061,348 - -1.6
1,061,384 + -0.2
1,061,494 + +0.1
1,061,499 - -0.5
1,061,511 + -0.2
1,061,515 + -1.4
1,061,523 - -0.4
1,061,548 + +0.8
1,061,570 - -0.8
1,061,571 + +0.1
1,061,579 - -0.6
1,061,579 - +1.1
1,061,611 - -0.0
1,061,616 - -1.0
1,061,617 - +0.9
1,061,624 - +0.4
1,061,631 + -0.9
1,061,633 - -0.2
1,061,657 + +0.4
1,061,659 - -0.1
1,061,660 - -1.0
1,061,670 + -0.4
1,061,671 + +0.3
1,061,676 + +1.5
1,061,698 - +0.1
1,061,722 + -0.3
1,061,759 - +1.1
1,061,767 + -1.0
1,061,777 - +0.1
1,061,782 - +0.4
1,061,801 + +0.6
1,061,806 - -0.0
1,061,809 - +0.1
1,061,809 - +0.1
1,061,810 - +0.6
1,061,812 + -0.1
1,061,813 + +1.3
1,061,814 + +0.0
1,061,814 + +0.4
1,061,828 - -0.4
1,061,837 + -0.2
1,061,838 - -0.3
1,061,847 + +1.3
1,061,848 + -0.6
1,061,850 + +0.7
1,061,850 - -1.0
1,061,854 - -0.7
1,061,866 - +0.4
1,061,867 - -0.3
1,061,871 + +0.2
1,061,877 + +0.0
1,061,982 - +0.1
1,061,983 + +0.1
1,062,004 + +1.0
1,062,060 + -1.5
1,062,152 - -0.3
1,062,155 - +0.6
1,062,167 - +0.0
1,062,180 - +0.5
1,062,204 + -0.7
1,062,264 + -1.0
1,062,321 - -0.0
1,062,917 + 8824 mRNA_456 0.35 -0.0
1,063,166 + 8824 mRNA_456 0.48 -0.1
1,063,540 + 8824 mRNA_456 0.67 +1.0
1,064,110 + +0.5
1,064,414 - -3.4

Or see this region's nucleotide sequence