Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_533

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8900 and 8901 are separated by 273 nucleotides8901 and 8902 are separated by 435 nucleotides mRNA_532: 8900 - K05355 hexPS, COQ1 hexaprenyl-diphosphate synthase, at 1,266,641 to 1,268,317 8900 mRNA_533: 8901 - K17759 AIBP, nnrE NAD(P)H-hydrate epimerase, at 1,268,591 to 1,269,786 8901 mRNA_534: 8902 - K08054 CANX calnexin, at 1,270,222 to 1,272,470 8902

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,268,225 + -0.2
1,268,366 + +0.8
1,268,385 - +0.9
1,268,392 - +0.9
1,268,657 + -0.5
1,268,657 + -0.3
1,268,928 - 8901 mRNA_533 0.28 +0.8
1,268,931 - 8901 mRNA_533 0.28 -1.0
1,269,074 - 8901 mRNA_533 0.40 -0.8
1,269,187 - 8901 mRNA_533 0.50 -0.1
1,269,205 + 8901 mRNA_533 0.51 +0.6
1,269,223 - 8901 mRNA_533 0.53 +0.3
1,269,245 - 8901 mRNA_533 0.55 +0.0
1,269,409 + 8901 mRNA_533 0.68 +0.6
1,269,653 - 8901 mRNA_533 0.89 +0.9
1,269,662 + 8901 mRNA_533 0.90 +0.1
1,269,674 + -0.0
1,269,797 - +0.3
1,269,805 - +0.9
1,269,806 - +0.3
1,269,925 - -0.3
1,269,946 - -1.2
1,270,081 - +0.8
1,270,090 - +0.3
1,270,111 - -0.6
1,270,113 - +1.4
1,270,154 + +0.1
1,270,158 - +0.2
1,270,158 - +1.1
1,270,162 - -0.5
1,270,163 + -0.4
1,270,164 - -0.1
1,270,166 + -0.9
1,270,171 - +0.8
1,270,171 - +0.2
1,270,176 - -0.2
1,270,177 + +0.2
1,270,178 - -0.1
1,270,182 - +0.9
1,270,186 + +0.5
1,270,188 + -0.3
1,270,296 + +0.8
1,270,310 - +0.6
1,270,315 - -0.2
1,270,326 - +0.4
1,270,330 - -0.1
1,270,338 - -0.3
1,270,384 + +0.7
1,270,458 - 8902 mRNA_534 0.10 +0.2
1,270,491 + 8902 mRNA_534 0.12 +0.2
1,270,495 + 8902 mRNA_534 0.12 -0.4
1,270,500 + 8902 mRNA_534 0.12 +0.2
1,270,623 + 8902 mRNA_534 0.18 +1.3
1,270,624 - 8902 mRNA_534 0.18 +0.2
1,270,630 + 8902 mRNA_534 0.18 -1.1
1,270,631 + 8902 mRNA_534 0.18 +0.6
1,270,760 + 8902 mRNA_534 0.24 +0.5

Or see this region's nucleotide sequence