Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_538

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8905 and 8906 are separated by 816 nucleotides8906 and 8907 are separated by 508 nucleotides mRNA_537: 8905 - KOG0725 Reductases with broad range of substrate specificities, at 1,274,632 to 1,275,903 8905 mRNA_538: 8906 - Hypothetical Protein, at 1,276,720 to 1,277,120 8906 mRNA_539: 8907 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157, at 1,277,629 to 1,279,340 8907

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,275,794 - -0.2
1,275,802 + -0.6
1,275,833 + -0.6
1,275,844 - +0.7
1,275,851 + -0.1
1,275,976 + -0.6
1,275,978 + -0.7
1,275,991 + -0.3
1,276,003 + -0.6
1,276,169 - -0.1
1,276,597 - -0.3
1,276,763 + 8906 mRNA_538 0.11 +0.0
1,276,870 + 8906 mRNA_538 0.37 -0.1
1,277,347 - -0.2
1,277,350 - -0.4
1,277,351 - +0.7
1,277,352 + +0.6
1,277,400 - -1.3
1,277,421 - +0.4
1,277,437 - -0.8
1,277,437 - -0.7
1,277,438 - -0.2
1,277,442 - -0.3
1,277,444 + -0.2
1,277,457 - +0.4
1,277,461 + +0.6
1,277,463 + +0.0
1,277,467 + -0.2
1,277,467 + -0.6
1,277,468 - +0.8
1,277,470 + +0.6
1,277,472 - +0.0
1,277,474 - +0.6
1,277,480 - -0.7
1,277,509 - -1.7
1,277,515 - +0.4
1,277,517 - +0.0
1,277,535 + +1.2
1,277,543 - -1.4
1,277,640 + +0.2
1,277,655 - -0.2
1,277,675 + -0.8
1,277,675 - -0.0
1,277,676 + -0.4
1,277,680 - -0.8
1,277,682 + +1.0
1,277,692 + -0.4
1,277,800 - -0.0
1,277,812 - 8907 mRNA_539 0.11 +0.6
1,277,822 - 8907 mRNA_539 0.11 -1.0
1,277,825 - 8907 mRNA_539 0.11 -0.7
1,277,834 - 8907 mRNA_539 0.12 -0.8
1,277,968 - 8907 mRNA_539 0.20 -1.1
1,278,003 + 8907 mRNA_539 0.22 +0.1

Or see this region's nucleotide sequence