Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_596

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8963 and 8964 are separated by 444 nucleotides mRNA_595: 8963 - KOG0137 Very-long-chain acyl-CoA dehydrogenase, at 1,429,134 to 1,431,703 8963 mRNA_596: 8964 - Hypothetical Protein, at 1,432,148 to 1,433,908 8964

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,431,403 + 8963 mRNA_595 0.88 +0.0
1,431,575 - -0.2
1,431,591 + -1.7
1,431,739 + -0.6
1,432,020 - +0.0
1,432,157 - -0.5
1,432,163 - -0.1
1,432,290 + +0.5
1,432,578 + 8964 mRNA_596 0.24 +0.2
1,432,639 + 8964 mRNA_596 0.28 +0.0
1,432,883 + 8964 mRNA_596 0.42 -0.3
1,432,901 - 8964 mRNA_596 0.43 -0.9
1,433,433 - 8964 mRNA_596 0.73 -0.3
1,434,073 - -0.2
1,434,144 + +0.4
1,434,170 - -3.0
1,434,202 - +0.4
1,434,639 + -0.4
1,434,768 - +0.6

Or see this region's nucleotide sequence