Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_601

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8968 and 8969 are separated by 428 nucleotides8969 and 8970 are separated by 277 nucleotides mRNA_600: 8968 - K17785 IMMT, FCJ1, MNOS2 mitofilin, at 1,443,273 to 1,445,582 8968 mRNA_601: 8969 - K01784 galE, GALE UDP-glucose 4-epimerase, at 1,446,011 to 1,447,734 8969 mRNA_602: 8970 - K14642 YND1 golgi apyrase, at 1,448,012 to 1,450,852 8970

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,445,058 + 8968 mRNA_600 0.77 -2.2
1,445,521 - -2.1
1,445,629 - +0.8
1,445,632 + -0.5
1,445,651 + +0.3
1,445,908 - -0.5
1,445,915 - -0.2
1,445,921 - -0.1
1,445,926 + -0.1
1,445,927 - +0.3
1,445,932 + -0.9
1,445,937 - +0.1
1,445,943 + +1.2
1,445,958 + +0.1
1,447,803 - +0.1
1,447,902 + +1.4
1,447,914 - +0.6
1,447,984 - -1.2
1,448,065 + +0.1
1,448,175 + +0.5
1,448,628 + 8970 mRNA_602 0.22 +0.6
1,448,634 - 8970 mRNA_602 0.22 -0.5

Or see this region's nucleotide sequence