Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_625

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 8992 and 8993 are separated by 689 nucleotides8993 and 8994 are separated by 706 nucleotides mRNA_624: 8992 - K13886 CORO1B_1C_6 coronin-1B/1C/6, at 1,496,252 to 1,498,125 8992 mRNA_625: 8993 - K13162 PCBP2_3_4 poly(rC)-binding protein 2/3/4, at 1,498,815 to 1,500,137 8993 mRNA_626: 8994 - K19423 epsE glycosyltransferase EpsE, at 1,500,844 to 1,503,706 8994

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,497,926 - 8992 mRNA_624 0.89 +1.0
1,498,049 - -1.0
1,498,197 + -0.2
1,498,216 + -0.7
1,498,219 + +0.6
1,498,337 - +0.3
1,498,477 + -0.1
1,498,479 - +0.3
1,498,495 + +0.4
1,498,666 + +0.7
1,498,667 + -0.1
1,498,795 - -1.1
1,498,800 - +0.4
1,498,823 - +0.1
1,500,250 - +1.1
1,500,267 + +0.1
1,500,422 + -0.7
1,500,562 + -1.0
1,500,591 + +0.1
1,500,633 + +0.7
1,500,635 - +0.4
1,500,640 + -0.2
1,500,644 - +0.1
1,500,924 + +0.9

Or see this region's nucleotide sequence