Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_651

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9018 and 9019 are separated by 155 nucleotides mRNA_650: 9018 - KOG0603 Ribosomal protein S6 kinase, at 1,565,768 to 1,568,049 9018 mRNA_651: 9019 - Hypothetical Protein, at 1,568,205 to 1,569,102 9019

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,567,348 + 9018 mRNA_650 0.69 +1.3
1,567,348 + 9018 mRNA_650 0.69 -0.3
1,567,350 - 9018 mRNA_650 0.69 +0.4
1,567,476 - 9018 mRNA_650 0.75 +0.7
1,567,641 - 9018 mRNA_650 0.82 +0.7
1,567,817 - 9018 mRNA_650 0.90 +0.4
1,568,262 + +0.0
1,568,435 - 9019 mRNA_651 0.26 -1.0
1,569,464 - +1.1
1,569,567 - -0.4
1,569,572 + +0.4
1,569,579 - -0.4
1,569,589 + +0.9
1,569,606 - +0.6
1,569,623 + +0.2
1,569,704 + -0.3
1,569,727 + -0.2
1,569,729 - +0.8
1,569,729 - +0.4
1,569,731 + -0.3
1,569,733 - -0.1
1,569,734 + +0.1
1,569,736 + -0.5
1,569,736 + -1.0
1,569,738 + -0.5
1,569,740 - -0.3
1,569,745 - -1.9
1,569,748 - -1.2
1,569,749 - -0.2
1,569,753 + +0.3
1,569,754 + -0.4
1,569,754 + -0.3
1,569,754 + +0.2
1,569,755 - -0.6
1,569,755 - +0.8
1,569,755 - +0.1
1,569,755 - -0.5
1,569,756 + -0.9
1,569,758 + -1.2
1,569,774 - -0.6
1,569,814 + +0.2
1,569,851 - +1.3
1,569,851 - -0.7
1,569,852 + -2.1
1,569,868 + -0.4
1,569,880 + +0.0
1,569,887 - -0.9
1,569,901 - +0.0
1,569,901 - +0.4
1,569,901 + +0.2
1,569,909 + -0.3
1,569,913 + -0.1
1,569,922 - -0.7
1,569,949 - +0.2
1,569,970 - -0.3
1,570,009 + +0.3
1,570,019 + -0.9

Or see this region's nucleotide sequence