Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_657

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9025 and 9026 are separated by 258 nucleotides mRNA_657: 9025 - Hypothetical Protein, at 1,581,260 to 1,582,108 9025 mRNA_658: 9026 - K11842 USP12_46 ubiquitin carboxyl-terminal hydrolase 12/46, at 1,582,367 to 1,585,803 9026

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,580,977 - -0.4
1,581,111 - +1.6
1,581,125 + -0.5
1,581,255 - -0.6
1,581,265 - -0.4
1,581,273 - +0.4
1,581,418 + 9025 mRNA_657 0.19 -0.2
1,581,525 + 9025 mRNA_657 0.31 +0.4
1,581,980 - 9025 mRNA_657 0.85 -0.8
1,582,834 + 9026 mRNA_658 0.14 +2.0

Or see this region's nucleotide sequence