Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_666

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9033 and 9034 are separated by 60 nucleotides9034 and 9035 are separated by 111 nucleotides mRNA_665: 9033 - K08853 AAK AP2-associated kinase, at 1,602,722 to 1,607,021 9033 mRNA_666: 9034 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,607,082 to 1,608,088 9034 mRNA_667: 9035 - Interpro Ribosome associated membrane protein RAMP4, at 1,608,200 to 1,608,918 9035

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,606,306 + 9033 mRNA_665 0.83 +0.7
1,607,148 - +0.0
1,607,636 + 9034 mRNA_666 0.55 +0.3
1,607,775 - 9034 mRNA_666 0.69 -0.4
1,607,926 - 9034 mRNA_666 0.84 +0.6
1,608,059 - -0.5
1,608,085 + +0.0
1,608,089 - +0.5
1,608,117 + +0.5
1,608,270 + -0.6
1,608,373 - 9035 mRNA_667 0.24 +1.9
1,608,394 - 9035 mRNA_667 0.27 +0.8
1,608,398 - 9035 mRNA_667 0.28 +0.2
1,608,402 - 9035 mRNA_667 0.28 +0.4
1,608,412 + 9035 mRNA_667 0.29 +0.3
1,608,473 + 9035 mRNA_667 0.38 +1.0
1,608,541 - 9035 mRNA_667 0.47 +0.6
1,608,545 - 9035 mRNA_667 0.48 -0.7
1,608,557 + 9035 mRNA_667 0.50 +0.8
1,608,694 - 9035 mRNA_667 0.69 +1.0
1,609,010 + +0.0
1,609,051 + +2.2

Or see this region's nucleotide sequence