Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_674

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9041 and 9042 are separated by 574 nucleotides9042 and 9043 are separated by 504 nucleotides mRNA_673: 9041 - BLAST chordin [Novocrania anomala], at 1,622,391 to 1,622,567 9041 mRNA_674: 9042 - K04382 PPP2C serine/threonine-protein phosphatase 2A catalytic subunit, at 1,623,142 to 1,624,836 9042 mRNA_675: 9043 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,625,341 to 1,626,264 9043

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,622,142 - -1.2
1,622,202 + +0.1
1,622,477 + 9041 mRNA_673 0.49 +0.2
1,622,606 - +0.6
1,622,627 - -0.2
1,622,640 - -0.9
1,622,642 + -0.2
1,622,649 - -0.9
1,622,756 + +1.0
1,622,765 + -0.6
1,622,776 - -1.5
1,622,790 - +0.2
1,622,922 - -0.6
1,622,925 + -0.1
1,622,928 + -0.6
1,622,942 - +0.0
1,622,949 + -1.1
1,622,952 + -0.8
1,623,079 - -0.5
1,623,091 + -1.1
1,625,567 - 9043 mRNA_675 0.24 +1.0

Or see this region's nucleotide sequence