Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_675

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9042 and 9043 are separated by 504 nucleotides9043 and 9044 are separated by 24 nucleotides9044 and 9045 are separated by 91 nucleotides mRNA_674: 9042 - K04382 PPP2C serine/threonine-protein phosphatase 2A catalytic subunit, at 1,623,142 to 1,624,836 9042 mRNA_675: 9043 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 1,625,341 to 1,626,264 9043 mRNA_676: 9044 - Hypothetical Protein, at 1,626,289 to 1,626,986 9044 mRNA_677: 9045 - Hypothetical Protein, at 1,627,078 to 1,627,551 9045

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,625,567 - 9043 mRNA_675 0.24 +1.0
1,625,845 - 9043 mRNA_675 0.55 +1.1
1,625,876 - 9043 mRNA_675 0.58 -0.4
1,626,012 + 9043 mRNA_675 0.73 +1.1
1,626,014 + 9043 mRNA_675 0.73 +1.6
1,626,030 - 9043 mRNA_675 0.75 +0.6
1,626,149 - 9043 mRNA_675 0.87 -0.2
1,626,154 + 9043 mRNA_675 0.88 +0.6
1,626,413 - 9044 mRNA_676 0.18 -0.2
1,627,037 - +0.3

Or see this region's nucleotide sequence