Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_723

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9090 and 9091 are separated by 472 nucleotides9091 and 9092 are separated by 257 nucleotides mRNA_722: 9090 - HMMPfam-Thiopurine S-methyltransferase (TPMT)-PF05724,ProSiteProfiles-Thiopurine or thiol or thiocyanate S-methyltransferase (TPMT) family profile.-PS51585,SUPERFAMILY--SSF53335, at 1,721,535 to 1,722,519 9090 mRNA_723: 9091 - K07127 uraH, pucM, hiuH 5-hydroxyisourate hydrolase, at 1,722,992 to 1,724,496 9091 mRNA_724: 9092 - HMMPfam-Ion transport protein-PF00520,SUPERFAMILY--SSF81324, at 1,724,754 to 1,725,732 9092

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,722,134 + 9090 mRNA_722 0.61 -0.6
1,722,559 - +0.4
1,722,575 + +0.3
1,722,575 + -0.9
1,722,719 + -0.8
1,723,272 - 9091 mRNA_723 0.19 -0.2
1,723,280 + 9091 mRNA_723 0.19 -0.3
1,723,463 - 9091 mRNA_723 0.31 -0.6
1,723,570 - 9091 mRNA_723 0.38 -0.3
1,723,629 + 9091 mRNA_723 0.42 -0.9
1,723,629 + 9091 mRNA_723 0.42 -0.1
1,723,630 - 9091 mRNA_723 0.42 +2.7
1,723,745 - 9091 mRNA_723 0.50 -1.9
1,723,896 - 9091 mRNA_723 0.60 -0.2
1,723,902 - 9091 mRNA_723 0.60 -0.4
1,723,909 + 9091 mRNA_723 0.61 -0.9
1,724,051 - 9091 mRNA_723 0.70 -1.5
1,724,057 - 9091 mRNA_723 0.71 +0.3
1,724,071 - 9091 mRNA_723 0.72 -0.7
1,724,072 + 9091 mRNA_723 0.72 +0.3
1,724,228 - 9091 mRNA_723 0.82 +0.3
1,724,229 + 9091 mRNA_723 0.82 -0.3
1,724,240 + 9091 mRNA_723 0.83 -0.7
1,724,349 - +0.2
1,724,457 - -0.5
1,724,472 - -0.9
1,724,473 - +0.0
1,724,473 - +0.2
1,724,483 - +0.7
1,724,484 - -0.2
1,724,485 - -0.7
1,724,486 + +1.0
1,724,489 + +1.5
1,724,492 + -1.0
1,724,496 - -0.2
1,724,550 - -0.5
1,724,565 - -0.4
1,724,573 + +0.8
1,724,638 - -0.8
1,724,670 - +0.1
1,724,672 - +0.6
1,724,672 - -1.2
1,724,678 - +0.2
1,724,684 - -0.8
1,724,687 + -0.3
1,724,688 + -0.6
1,724,690 - +0.2
1,724,699 + +0.4
1,724,702 - -1.6
1,724,704 + +0.3
1,724,710 - -0.9
1,724,711 - +0.4
1,724,796 + -1.2
1,724,830 - -0.0
1,724,874 - 9092 mRNA_724 0.12 +0.1
1,724,887 + 9092 mRNA_724 0.14 -0.9
1,724,984 + 9092 mRNA_724 0.23 -1.1
1,724,998 - 9092 mRNA_724 0.25 +0.2
1,725,420 + 9092 mRNA_724 0.68 +0.2

Or see this region's nucleotide sequence