Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_733

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9100 and 9101 are separated by 42 nucleotides9101 and 9102 are separated by 395 nucleotides mRNA_732: 9100 - HMMPfam-Dioxygenase-PF00775,HMMPfam-Catechol dioxygenase N terminus-PF04444,SUPERFAMILY--SSF49482, at 1,746,932 to 1,748,724 9100 mRNA_733: 9101 - K13954 yiaY alcohol dehydrogenase, at 1,748,767 to 1,750,473 9101 mRNA_734: 9102 - K08149 SLC2A12, GLUT12 MFS transporter, SP family, solute carrier family 2 (facilitated glucose transporter), member 12, at 1,750,869 to 1,753,209 9102

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,748,049 - 9100 mRNA_732 0.62 -0.8
1,748,114 - 9100 mRNA_732 0.66 -0.0
1,748,120 - 9100 mRNA_732 0.66 -1.5
1,748,126 + 9100 mRNA_732 0.67 +0.1
1,748,328 + 9100 mRNA_732 0.78 -0.4
1,748,383 - 9100 mRNA_732 0.81 +1.1
1,748,385 - 9100 mRNA_732 0.81 -0.2
1,748,407 + 9100 mRNA_732 0.82 +0.4
1,748,481 - 9100 mRNA_732 0.86 +1.3
1,748,494 + 9100 mRNA_732 0.87 -0.2
1,748,520 - 9100 mRNA_732 0.89 +0.2
1,748,657 + -0.5
1,748,664 - +0.1
1,748,697 + +0.5
1,748,718 - +0.3
1,748,816 - +1.1
1,748,843 + -1.0
1,748,846 - +1.2
1,748,945 + 9101 mRNA_733 0.10 -0.1
1,749,173 - 9101 mRNA_733 0.24 +0.1
1,749,245 + 9101 mRNA_733 0.28 +0.1
1,749,264 - 9101 mRNA_733 0.29 +0.8
1,749,276 - 9101 mRNA_733 0.30 +0.0
1,749,314 - 9101 mRNA_733 0.32 -1.0
1,749,377 + 9101 mRNA_733 0.36 -1.3
1,749,389 + 9101 mRNA_733 0.36 -0.8
1,749,554 + 9101 mRNA_733 0.46 -1.2
1,749,554 + 9101 mRNA_733 0.46 -2.8
1,749,624 + 9101 mRNA_733 0.50 +0.9
1,749,678 - 9101 mRNA_733 0.53 +1.4
1,749,702 - 9101 mRNA_733 0.55 -0.0
1,749,765 + 9101 mRNA_733 0.58 +0.3
1,749,833 - 9101 mRNA_733 0.62 +0.9
1,750,110 + 9101 mRNA_733 0.79 +0.2
1,750,153 + 9101 mRNA_733 0.81 -0.2
1,750,175 - 9101 mRNA_733 0.82 -0.4
1,750,562 - -1.1
1,751,371 + 9102 mRNA_734 0.21 -0.6

Or see this region's nucleotide sequence