Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_742

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9109 and 9110 are separated by 183 nucleotides9110 and 9111 are separated by 385 nucleotides mRNA_741: 9109 - K12858 DDX23, PRP28 ATP-dependent RNA helicase DDX23/PRP28, at 1,771,104 to 1,774,231 9109 mRNA_742: 9110 - HMMPfam-SPT2 chromatin protein-PF08243,SMART-SPT2 chromatin protein-SM00784, at 1,774,415 to 1,775,869 9110 mRNA_743: 9111 - K08493 VTI1 vesicle transport through interaction with t-SNAREs 1, at 1,776,255 to 1,777,416 9111

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,774,309 + -0.1
1,774,376 + +0.3
1,774,457 - -0.5
1,774,619 + 9110 mRNA_742 0.14 +0.1
1,774,922 - 9110 mRNA_742 0.35 +0.3
1,775,044 - 9110 mRNA_742 0.43 -0.2
1,775,208 - 9110 mRNA_742 0.55 +0.1
1,775,365 + 9110 mRNA_742 0.65 -0.9
1,775,502 + 9110 mRNA_742 0.75 +0.8
1,775,891 - +0.5
1,775,895 - -0.4
1,775,915 + +1.5
1,776,053 + +0.2
1,776,055 - +0.1
1,776,063 + -0.1
1,776,063 - -0.1
1,776,395 + 9111 mRNA_743 0.12 +0.7
1,776,745 - 9111 mRNA_743 0.42 +0.0
1,776,850 + 9111 mRNA_743 0.51 +0.9

Or see this region's nucleotide sequence