Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_762

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9129 and 9130 are separated by 303 nucleotides9130 and 9131 are separated by 405 nucleotides mRNA_761: 9129 - KOG2919 Guanine nucleotide-binding protein, at 1,818,888 to 1,820,583 9129 mRNA_762: 9130 - K11090 LA, SSB lupus La protein, at 1,820,887 to 1,822,873 9130 mRNA_763: 9131 - KOG4686 Predicted sugar transporter, at 1,823,279 to 1,825,136 9131

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,819,891 - 9129 mRNA_761 0.59 +0.2
1,820,028 + 9129 mRNA_761 0.67 +0.0
1,820,039 - 9129 mRNA_761 0.68 -0.6
1,820,192 - 9129 mRNA_761 0.77 -1.7
1,820,618 + -0.5
1,820,634 + -1.2
1,820,657 + +1.4
1,820,677 - -0.2
1,820,772 - -0.4
1,820,783 + -0.8
1,820,794 + -0.4
1,820,799 - +0.8
1,820,814 + +0.3
1,822,243 - 9130 mRNA_762 0.68 -2.1
1,822,576 - 9130 mRNA_762 0.85 +1.2
1,822,691 - -0.4
1,822,989 - +0.2
1,822,989 + -0.4
1,823,143 - -0.6
1,823,170 - -0.1
1,823,175 + -0.5
1,823,192 + +0.2
1,823,319 - -1.1
1,823,455 + +0.9
1,823,607 + 9131 mRNA_763 0.18 +0.8

Or see this region's nucleotide sequence