Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_803

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9170 and 9171 are separated by 390 nucleotides mRNA_802: 9170 - SUPERFAMILY--SSF52047, at 1,907,312 to 1,908,570 9170 mRNA_803: 9171 - HMMPfam-Velvet factor-PF11754, at 1,908,961 to 1,910,410 9171

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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1,908,217 - 9170 mRNA_802 0.72 +0.6
1,909,528 - 9171 mRNA_803 0.39 +0.3
1,910,160 + 9171 mRNA_803 0.83 -0.7
1,910,609 - -1.9
1,910,742 - -0.3
1,910,746 - +1.4
1,910,747 - +0.1
1,910,750 + +1.8
1,910,763 - +0.0
1,910,766 - +0.3
1,910,767 - -0.5
1,910,882 - -0.6
1,910,901 - +0.1
1,910,913 + +0.2
1,910,918 + +0.0
1,910,928 - +0.0
1,910,932 + +0.1
1,910,932 + +0.5
1,910,938 + +0.3
1,910,942 + +0.4
1,910,988 + -1.0
1,911,044 - -0.2
1,911,049 - -0.1
1,911,058 + +0.6
1,911,066 + -0.7
1,911,066 + +0.7
1,911,070 + +0.0
1,911,085 + +0.0
1,911,089 + -0.1
1,911,095 + +0.1
1,911,195 - +1.2
1,911,208 - +0.1
1,911,215 + +0.6
1,911,219 - -1.6
1,911,363 - +1.2
1,911,364 + -0.3
1,911,368 - -0.5
1,911,372 - +1.2
1,911,375 + +0.5
1,911,375 + -0.1
1,911,378 - +0.3
1,911,380 - -0.1
1,911,381 + +0.1
1,911,382 - -0.1
1,911,383 + -0.5
1,911,383 + +0.0
1,911,383 - +0.1
1,911,386 + -0.0
1,911,387 - -0.0
1,911,395 - +0.8
1,911,398 + +0.4
1,911,398 + -0.1
1,911,399 + +1.0

Or see this region's nucleotide sequence