Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_842

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9209 and 9210 are separated by 195 nucleotides9210 and 9211 are separated by 107 nucleotides mRNA_841: 9209 - HMMPfam-Kinetochore protein CHL4 like-PF05238, at 2,015,079 to 2,016,824 9209 mRNA_842: 9210 - K02148 ATPeV1C, ATP6C V-type H+-transporting ATPase subunit C, at 2,017,020 to 2,018,936 9210 mRNA_843: 9211 - KOG2262 Sexual differentiation process protein ISP4, at 2,019,044 to 2,022,236 9211

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
2,016,432 - 9209 mRNA_841 0.77 +0.2
2,016,562 - 9209 mRNA_841 0.85 +0.5
2,016,722 - +0.2
2,016,727 + +0.4
2,016,864 - -1.2
2,016,869 - +0.1
2,018,921 + +0.1
2,019,052 - -1.0
2,019,055 - -1.1
2,019,256 - -0.4
2,019,371 - 9211 mRNA_843 0.10 -1.2
2,019,639 - 9211 mRNA_843 0.19 +0.4
2,019,645 + 9211 mRNA_843 0.19 +0.3
2,019,780 - 9211 mRNA_843 0.23 -0.2

Or see this region's nucleotide sequence