Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_868

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9235 and 9236 are separated by 412 nucleotides9236 and 9237 are separated by 175 nucleotides mRNA_867: 9235 - K17808 ZIM17, DNLZ, Tim15 mitochondrial protein import protein ZIM17, at 2,073,373 to 2,073,740 9235 mRNA_868: 9236 - K14782 AATF, BFR2 protein AATF/BFR2, at 2,074,153 to 2,076,198 9236 mRNA_869: 9237 - K17605 PPP2R4, PTPA serine/threonine-protein phosphatase 2A activator, at 2,076,374 to 2,078,080 9237

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,073,332 + +0.6
2,074,081 + +0.6
2,074,087 + -0.2
2,076,157 + -0.3
2,076,276 - -0.1
2,076,289 - +1.3
2,076,296 + +2.1
2,076,299 - -0.4
2,076,428 + +0.2
2,076,570 - 9237 mRNA_869 0.11 +0.7
2,076,612 + 9237 mRNA_869 0.14 -0.4
2,076,766 + 9237 mRNA_869 0.23 -0.4
2,076,900 + 9237 mRNA_869 0.31 -0.0
2,076,930 + 9237 mRNA_869 0.33 -0.6

Or see this region's nucleotide sequence