Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_913

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9280 and 9281 are separated by 12 nucleotides9281 and 9282 are separated by 415 nucleotides mRNA_912: 9280 - Hypothetical Protein, at 2,179,052 to 2,180,263 9280 mRNA_913: 9281 - Hypothetical Protein, at 2,180,276 to 2,181,730 9281 mRNA_914: 9282 - K10903 HUS1 HUS1 checkpoint protein, at 2,182,146 to 2,183,559 9282

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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2,179,276 - 9280 mRNA_912 0.18 -0.4
2,179,415 - 9280 mRNA_912 0.30 +0.3
2,179,846 - 9280 mRNA_912 0.66 -1.4
2,180,155 - -0.9
2,180,434 - 9281 mRNA_913 0.11 -1.4
2,180,581 - 9281 mRNA_913 0.21 -1.6
2,181,336 + 9281 mRNA_913 0.73 -0.7
2,181,730 - -1.7
2,181,911 + +0.4
2,181,926 - -0.7
2,182,197 + -1.2

Or see this region's nucleotide sequence