Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_934

Experiment: 40 hrs Low Buoyancy

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9301 and 9302 are separated by 239 nucleotides9302 and 9303 are separated by 239 nucleotides mRNA_933: 9301 - HMMPfam-NDT80 / PhoG like DNA-binding family-PF05224,ProSiteProfiles-NDT80 DNA-binding domain profile.-PS51517,SUPERFAMILY--SSF49417, at 9,624 to 11,846 9301 mRNA_934: 9302 - K18726 FAF2, UBXD8 FAS-associated factor 2, at 12,086 to 14,306 9302 mRNA_935: 9303 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 14,546 to 16,225 9303

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
remove
11,492 + 9301 mRNA_933 0.84 -0.5
11,629 + +0.6
11,727 - -1.1
11,740 - +0.7
11,844 - -0.7
11,885 - -0.1
12,062 - -0.3
12,172 + +0.2
12,342 + 9302 mRNA_934 0.12 +1.2
13,054 + 9302 mRNA_934 0.44 -0.4
13,191 + 9302 mRNA_934 0.50 +0.6
13,340 - 9302 mRNA_934 0.56 -0.1
13,678 + 9302 mRNA_934 0.72 -0.2
13,776 + 9302 mRNA_934 0.76 +1.6
14,083 - 9302 mRNA_934 0.90 +0.0
14,221 - -0.8
14,382 - +0.9
14,501 - +0.1
14,553 + +0.7
14,802 + 9303 mRNA_935 0.15 -1.2
14,804 - 9303 mRNA_935 0.15 +0.4
14,914 + 9303 mRNA_935 0.22 +0.4
14,946 - 9303 mRNA_935 0.24 +0.7
14,983 - 9303 mRNA_935 0.26 -0.2
15,237 - 9303 mRNA_935 0.41 +0.0
15,245 - 9303 mRNA_935 0.42 -0.2
15,262 + 9303 mRNA_935 0.43 -0.5

Or see this region's nucleotide sequence