Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_970

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9337 and 9338 are separated by 177 nucleotides mRNA_969: 9337 - Hypothetical Protein, at 99,924 to 100,860 9337 mRNA_970: 9338 - Hypothetical Protein, at 101,038 to 101,526 9338

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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100,148 + 9337 mRNA_969 0.24 +1.2
100,163 + 9337 mRNA_969 0.26 +1.3
100,421 + 9337 mRNA_969 0.53 -0.7
101,027 - -0.4
101,032 + +0.9
101,033 + +0.2
101,579 + -0.7
101,879 - -0.7
101,902 + -0.1
102,324 - +0.4
102,334 + +0.5
102,337 + -1.2
102,369 + -0.4
102,388 - +0.0
102,392 + -1.3
102,392 + -0.8
102,396 - -0.5
102,396 + -0.5
102,398 - -0.3
102,399 + -1.0
102,400 - +0.0
102,401 - +0.1
102,403 + -2.5
102,403 + -0.1
102,404 - -0.2
102,404 - +0.6
102,405 + -0.8
102,412 + -1.3
102,473 - -0.0
102,474 + -0.5
102,476 - +0.9

Or see this region's nucleotide sequence