Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_972

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9339 and 9340 are separated by 427 nucleotides9340 and 9341 are separated by 216 nucleotides mRNA_971: 9339 - KOG2262 Sexual differentiation process protein ISP4, at 104,337 to 107,412 9339 mRNA_972: 9340 - Hypothetical Protein, at 107,840 to 108,806 9340 mRNA_973: 9341 - KOG4648 Uncharacterized conserved protein, contains LRR repeats, at 109,023 to 112,852 9341

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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106,892 + 9339 mRNA_971 0.83 +0.0
107,017 + 9339 mRNA_971 0.87 -0.3
107,023 - 9339 mRNA_971 0.87 -0.8
107,031 + 9339 mRNA_971 0.88 -0.9
107,040 + 9339 mRNA_971 0.88 +0.7
107,122 + -0.7
107,184 - -1.1
107,213 + +0.8
107,218 - -0.6
107,233 + +0.1
107,266 + -0.1
107,327 - +0.0
107,340 - +0.3
107,345 + +0.4
107,352 + +0.5
107,363 - +0.4
107,370 + -1.0
107,430 + -0.1
107,461 - +0.3
107,464 - +0.3
107,471 + -0.2
107,483 - -0.5
107,488 - -0.2
107,490 + -0.8
107,491 - -0.5
107,499 - -0.4
107,499 - +0.1
107,499 - -0.2
107,500 + -0.2
107,508 - -0.3
107,509 + -0.6
107,515 + -0.8
107,515 - -0.3
107,519 - -0.6
107,522 - -1.1
107,523 + -0.4
107,524 + -0.3
107,526 + -0.7
107,535 + -1.0
107,537 + -0.1
107,540 - -0.0
107,548 + +0.2
107,548 - +1.1
107,554 + +0.7
107,559 - -0.1
107,560 + -1.1
107,560 - +0.2
107,567 + +0.1
107,571 - +0.2
107,576 - -0.4
107,577 + +0.0
107,581 - +0.2
107,585 - -0.4
107,585 - +0.1
107,585 + -0.1
107,585 + +1.1
107,586 + +0.4
107,640 + +0.1
107,645 - -1.2
107,653 + -1.2
107,674 - +0.4
107,683 - +0.3
107,687 - +0.0
107,690 - -0.4
107,691 + -0.6
107,693 - +1.0
107,693 - +0.3
107,698 + -0.2
107,700 - +0.9
107,712 + -1.1
107,713 - -0.3
107,714 - -0.4
107,717 - -0.3
107,719 - -0.4
107,720 - +0.3
107,721 - +0.9
107,729 + -0.3
107,730 - +2.1
107,731 + +0.4
107,738 + +0.5
107,739 + +0.0
107,739 + +1.4
107,756 - +0.8
107,763 + +0.7
107,799 + +0.4
107,804 + +0.2
107,804 - +0.2
107,808 + +0.7
107,816 - -1.4
107,838 - -0.5
107,838 - +0.4
107,853 + -0.0
107,865 + -0.3
107,866 + -0.5
107,866 + +0.5
107,882 - +1.8
107,883 - +0.2
107,891 - +0.0
107,895 - +0.3
107,896 + +0.5
107,897 - -0.2
107,898 + +0.3
107,898 + +0.1
107,907 - -2.0
107,909 - +1.1
107,909 - +0.3
107,910 + +1.3
107,910 + -0.7
107,913 + +0.2
107,914 - +0.1
107,914 - +0.2
107,921 + -0.5
107,923 - +0.9
107,928 + +0.1
107,929 - -0.1
107,933 - +0.0
107,943 + 9340 mRNA_972 0.11 +0.6
107,948 - 9340 mRNA_972 0.11 -0.7
107,951 - 9340 mRNA_972 0.11 -0.5
107,954 + 9340 mRNA_972 0.12 -1.7
107,958 - 9340 mRNA_972 0.12 -0.6
107,962 + 9340 mRNA_972 0.13 -0.9
107,966 + 9340 mRNA_972 0.13 -1.3
107,978 + 9340 mRNA_972 0.14 -0.1
107,980 - 9340 mRNA_972 0.14 +0.3
108,046 + 9340 mRNA_972 0.21 +0.4
108,065 + 9340 mRNA_972 0.23 -1.3
108,071 - 9340 mRNA_972 0.24 +0.8
108,084 + 9340 mRNA_972 0.25 +0.3
108,089 + 9340 mRNA_972 0.26 +0.2
108,099 - 9340 mRNA_972 0.27 -1.1
108,114 + 9340 mRNA_972 0.28 +0.1
108,117 - 9340 mRNA_972 0.29 +0.5
108,127 - 9340 mRNA_972 0.30 +0.3
108,128 - 9340 mRNA_972 0.30 +0.8
108,131 + 9340 mRNA_972 0.30 -0.2
108,131 + 9340 mRNA_972 0.30 -1.4
108,139 - 9340 mRNA_972 0.31 -0.1
108,145 + 9340 mRNA_972 0.32 -0.3
108,147 - 9340 mRNA_972 0.32 -0.5
108,166 + 9340 mRNA_972 0.34 +0.9
108,169 + 9340 mRNA_972 0.34 -0.7
108,192 - 9340 mRNA_972 0.36 +0.3
108,197 + 9340 mRNA_972 0.37 -0.7
108,215 + 9340 mRNA_972 0.39 -0.1
108,220 + 9340 mRNA_972 0.39 -0.6
108,228 - 9340 mRNA_972 0.40 -0.3
108,231 - 9340 mRNA_972 0.40 +0.9
108,233 - 9340 mRNA_972 0.41 -0.2
108,233 + 9340 mRNA_972 0.41 +0.1
108,234 - 9340 mRNA_972 0.41 -0.1
108,247 - 9340 mRNA_972 0.42 +0.6
108,248 + 9340 mRNA_972 0.42 +0.5
108,250 + 9340 mRNA_972 0.42 +0.7
108,252 - 9340 mRNA_972 0.43 +0.3
108,254 + 9340 mRNA_972 0.43 +1.7
108,257 - 9340 mRNA_972 0.43 +2.0
108,259 + 9340 mRNA_972 0.43 +0.3
108,261 - 9340 mRNA_972 0.44 -0.9
108,265 - 9340 mRNA_972 0.44 +1.0
108,266 + 9340 mRNA_972 0.44 +0.4
108,270 - 9340 mRNA_972 0.44 -1.3
108,270 - 9340 mRNA_972 0.44 +0.8
108,271 + 9340 mRNA_972 0.45 -0.2
108,271 + 9340 mRNA_972 0.45 -0.3
108,273 - 9340 mRNA_972 0.45 -0.3
108,286 - 9340 mRNA_972 0.46 +0.2
108,293 - 9340 mRNA_972 0.47 -0.2
108,297 - 9340 mRNA_972 0.47 -0.8
108,298 - 9340 mRNA_972 0.47 +0.1
108,298 + 9340 mRNA_972 0.47 -0.4
108,298 + 9340 mRNA_972 0.47 +0.6
108,304 - 9340 mRNA_972 0.48 +1.2
108,314 - 9340 mRNA_972 0.49 -1.4
108,328 + 9340 mRNA_972 0.50 +0.1
108,338 + 9340 mRNA_972 0.51 -0.7
108,357 + 9340 mRNA_972 0.53 -0.1
108,378 + 9340 mRNA_972 0.56 -0.3
108,378 - 9340 mRNA_972 0.56 +1.2
108,390 + 9340 mRNA_972 0.57 -0.1
108,398 - 9340 mRNA_972 0.58 -0.3
108,399 - 9340 mRNA_972 0.58 +0.1
108,400 - 9340 mRNA_972 0.58 +0.9
108,409 + 9340 mRNA_972 0.59 +0.5
108,424 + 9340 mRNA_972 0.60 -1.1
108,433 + 9340 mRNA_972 0.61 -0.3
108,455 + 9340 mRNA_972 0.64 -0.6
108,460 + 9340 mRNA_972 0.64 +0.1
108,461 + 9340 mRNA_972 0.64 +1.4
108,462 - 9340 mRNA_972 0.64 -1.4
108,472 + 9340 mRNA_972 0.65 -0.6
108,474 + 9340 mRNA_972 0.66 -0.1
108,496 - 9340 mRNA_972 0.68 +0.1
108,497 + 9340 mRNA_972 0.68 +0.4
108,502 + 9340 mRNA_972 0.68 +1.4
108,503 + 9340 mRNA_972 0.69 +0.3
108,504 + 9340 mRNA_972 0.69 -0.1
108,505 + 9340 mRNA_972 0.69 -1.5
108,506 + 9340 mRNA_972 0.69 -0.4
108,507 - 9340 mRNA_972 0.69 +0.6
108,516 + 9340 mRNA_972 0.70 -0.9
108,524 - 9340 mRNA_972 0.71 +0.3
108,534 - 9340 mRNA_972 0.72 +0.4
108,535 - 9340 mRNA_972 0.72 -0.3
108,536 - 9340 mRNA_972 0.72 -0.4
108,542 + 9340 mRNA_972 0.73 -0.5
108,545 - 9340 mRNA_972 0.73 +1.3
108,546 - 9340 mRNA_972 0.73 -0.2
108,547 + 9340 mRNA_972 0.73 +1.3
108,554 - 9340 mRNA_972 0.74 +0.1
108,555 + 9340 mRNA_972 0.74 -1.6
108,558 + 9340 mRNA_972 0.74 -1.8
108,559 + 9340 mRNA_972 0.74 -0.1
108,588 + 9340 mRNA_972 0.77 +0.2
108,597 - 9340 mRNA_972 0.78 -0.1
108,626 + 9340 mRNA_972 0.81 -0.0
108,647 + 9340 mRNA_972 0.83 -0.2
108,651 - 9340 mRNA_972 0.84 -0.1
108,666 + 9340 mRNA_972 0.85 -1.8
108,762 + +0.1
108,772 + +0.2
108,772 + -0.5
108,783 + +0.8
108,789 - +0.5
108,794 - -0.4
108,796 + -0.2
108,801 + -0.6
108,802 + -0.7
108,803 + -0.5
108,807 + +0.4
108,807 + +1.1
108,808 + -1.3
108,816 - -1.0
108,818 + +0.4
108,830 - +0.3
108,836 - +0.1
108,930 - -0.1
108,940 + -0.4
108,947 - -1.4
108,972 - -0.6
108,988 + -1.2
109,059 + -0.1
109,094 - -0.4
109,098 + +0.4
109,100 - +0.5
109,238 + +1.9
109,682 - 9341 mRNA_973 0.17 +0.1

Or see this region's nucleotide sequence