Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1009

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9376 and 9377 are separated by 285 nucleotides9377 and 9378 are separated by 659 nucleotides mRNA_1008: 9376 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 193,375 to 193,873 9376 mRNA_1009: 9377 - K12659 ARG56 N-acetyl-gamma-glutamyl-phosphate reductase / acetylglutamate kinase, at 194,159 to 197,453 9377 mRNA_1010: 9378 - K16569 TUBGCP2, GCP2 gamma-tubulin complex component 2, at 198,113 to 201,234 9378

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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193,240 - -0.1
193,418 + -0.9
193,652 - 9376 mRNA_1008 0.56 +1.0
193,652 - 9376 mRNA_1008 0.56 +0.4
193,668 - 9376 mRNA_1008 0.59 +0.6
193,680 + 9376 mRNA_1008 0.61 +1.0
193,806 - 9376 mRNA_1008 0.86 +0.4
193,830 - +0.3
193,832 + -0.9
193,950 - +1.0
193,953 - +0.5
193,963 - +0.1
193,965 - +0.4
193,971 + -0.2
193,971 - +0.5
193,974 - -0.3
193,974 - -0.7
193,975 + +1.0
193,978 - -0.0
193,988 - +0.3
193,990 + -0.5
194,000 + -0.9
194,104 + +0.1
194,109 - -0.6
194,110 + +0.7
194,112 - +0.0
194,140 + +0.7
194,231 + +0.2
194,236 + -0.6
194,255 - +0.5
194,396 + -0.3
194,402 - -0.8
194,426 - +2.0
194,575 + 9377 mRNA_1009 0.13 -1.2
194,576 + 9377 mRNA_1009 0.13 -0.0
195,021 + 9377 mRNA_1009 0.26 +1.1
195,179 + 9377 mRNA_1009 0.31 -0.7
195,323 + 9377 mRNA_1009 0.35 -0.5
195,497 + 9377 mRNA_1009 0.41 -0.1
195,593 + 9377 mRNA_1009 0.44 +0.3
195,747 + 9377 mRNA_1009 0.48 -0.2
195,921 + 9377 mRNA_1009 0.53 -0.5
196,047 + 9377 mRNA_1009 0.57 -0.3
196,239 + 9377 mRNA_1009 0.63 -0.3
196,327 + 9377 mRNA_1009 0.66 +1.0
196,328 - 9377 mRNA_1009 0.66 -1.4
196,352 + 9377 mRNA_1009 0.67 -0.7
196,397 - 9377 mRNA_1009 0.68 -0.0
196,460 - 9377 mRNA_1009 0.70 -1.9
196,605 - 9377 mRNA_1009 0.74 +0.4
196,653 + 9377 mRNA_1009 0.76 -0.8
196,905 - 9377 mRNA_1009 0.83 -0.2
197,059 - 9377 mRNA_1009 0.88 +1.1
197,078 - 9377 mRNA_1009 0.89 +1.7
197,224 + -0.1
197,237 - +0.1
197,345 + -0.3
197,449 - -0.1
197,506 - -0.7

Or see this region's nucleotide sequence