Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1020

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9387 and 9388 are separated by 237 nucleotides9388 and 9389 are separated by 453 nucleotides mRNA_1019: 9387 - K02835 prfA, MTRF1, MRF1 peptide chain release factor 1, at 220,275 to 221,904 9387 mRNA_1020: 9388 - K01527 EGD1, BTF3 nascent polypeptide-associated complex subunit beta, at 222,142 to 223,175 9388 mRNA_1021: 9389 - KOG3457 Sec61 protein translocation complex, beta subunit, at 223,629 to 224,377 9389

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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221,932 - -1.4
221,937 - -0.2
221,958 - -0.8
222,077 - -0.3
222,081 - -1.4
222,082 - +1.4
222,083 - +0.2
222,086 + +0.5
222,100 - -0.5
222,106 - -0.3
222,265 + 9388 mRNA_1020 0.12 +0.3
222,270 - 9388 mRNA_1020 0.12 -0.9
222,416 - 9388 mRNA_1020 0.26 +1.3
222,538 - 9388 mRNA_1020 0.38 +0.6
222,576 - 9388 mRNA_1020 0.42 -0.9
222,823 + 9388 mRNA_1020 0.66 -1.1
222,830 + 9388 mRNA_1020 0.67 -0.9
223,000 - 9388 mRNA_1020 0.83 -0.0
223,294 - -1.1
223,452 + +1.0
223,574 + +0.3

Or see this region's nucleotide sequence