Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1071

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9438 and 9439 are separated by 288 nucleotides9439 and 9440 are separated by 815 nucleotides mRNA_1070: 9438 - K20792 NAA15_16 N-alpha-acetyltransferase 15/16, NatA auxiliary subunit, at 333,722 to 337,577 9438 mRNA_1071: 9439 - K18757 LARP1 la-related protein 1, at 337,866 to 340,861 9439 mRNA_1072: 9440 - Hypothetical Protein, at 341,677 to 343,060 9440

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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337,283 - +1.6
337,688 - -0.3
337,844 + -0.3
337,941 - +0.2
338,172 + 9439 mRNA_1071 0.10 -0.7
338,460 + 9439 mRNA_1071 0.20 -0.9
338,509 - 9439 mRNA_1071 0.21 +0.3
338,872 + 9439 mRNA_1071 0.34 -0.3
339,251 - 9439 mRNA_1071 0.46 -0.1
339,330 + 9439 mRNA_1071 0.49 -0.4
339,330 + 9439 mRNA_1071 0.49 -0.6
339,612 - 9439 mRNA_1071 0.58 -0.5
339,647 - 9439 mRNA_1071 0.59 -0.1
340,179 + 9439 mRNA_1071 0.77 -1.1
340,263 - 9439 mRNA_1071 0.80 +0.6
341,075 + -0.1
341,085 + -0.3
341,105 + -0.1
341,343 - +0.0
341,375 - +0.6
341,665 - -1.2

Or see this region's nucleotide sequence