Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1222

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9589 and 9590 are separated by 294 nucleotides9590 and 9591 are separated by 877 nucleotides mRNA_1221: 9589 - K01810 GPI, pgi glucose-6-phosphate isomerase, at 679,841 to 682,126 9589 mRNA_1222: 9590 - BLAST proteophosphoglycan ppg4 [Moniliophthora roreri M..., at 682,421 to 686,506 9590 mRNA_1223: 9591 - PRINTS-Proline rich extensin signature-PR01217, at 687,384 to 689,890 9591

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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682,145 + -1.8
682,446 + -0.6
682,646 + -0.2
682,646 - -0.2
683,192 + 9590 mRNA_1222 0.19 -0.2
683,418 + 9590 mRNA_1222 0.24 +0.0
683,461 - 9590 mRNA_1222 0.25 -1.0
683,470 - 9590 mRNA_1222 0.26 -0.5
683,563 - 9590 mRNA_1222 0.28 -0.3
683,586 - 9590 mRNA_1222 0.29 +0.4
683,599 + 9590 mRNA_1222 0.29 -0.2
683,719 - 9590 mRNA_1222 0.32 +0.1
683,891 - 9590 mRNA_1222 0.36 +0.4
683,992 + 9590 mRNA_1222 0.38 -0.2
684,002 - 9590 mRNA_1222 0.39 +0.4
684,713 + 9590 mRNA_1222 0.56 -0.8
684,819 - 9590 mRNA_1222 0.59 +0.5
685,003 + 9590 mRNA_1222 0.63 +0.2
685,052 - 9590 mRNA_1222 0.64 +0.1
685,272 + 9590 mRNA_1222 0.70 +0.4
685,604 + 9590 mRNA_1222 0.78 +0.1
685,708 + 9590 mRNA_1222 0.80 -0.4
685,864 + 9590 mRNA_1222 0.84 +0.6
685,905 - 9590 mRNA_1222 0.85 -0.1
686,167 + +0.5
686,169 - -0.1
686,211 - -0.1
686,294 - -0.2
686,610 - +0.1
686,681 - +0.1
686,734 + +0.3
686,767 + -0.4
686,790 + +0.9
686,826 - -0.7
686,843 - -0.5
686,880 - +0.4
686,885 - +0.2
686,887 - +1.5
686,889 + -0.1
686,900 + -0.1
686,917 + +0.3
686,923 + +0.2
686,954 + +1.7
686,964 - -0.5
686,988 - +0.7
686,988 - +0.0
687,015 - -0.1
687,018 + +0.3
687,029 + -0.7
687,033 + +0.8
687,043 - -0.6
687,046 + -0.3
687,052 + +0.0
687,061 + +0.3
687,064 - +0.2
687,186 - +0.2
687,192 - -0.2
687,214 + +0.4
687,363 + -0.2
687,497 + -0.1

Or see this region's nucleotide sequence