Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1467

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9834 and 9835 are separated by 359 nucleotides mRNA_1466: 9834 - BLAST putative catalytic domain thiamin pyrophosphokinase [..., at 352,655 to 354,087 9834 mRNA_1467: 9835 - HMMPfam-Mannosyl oligosaccharide glucosidase-PF03200,SUPERFAMILY--SSF48208, at 354,447 to 358,959 9835

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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353,973 - -0.8
353,985 + +0.1
354,103 - +0.1
354,124 - -1.7
354,184 + +0.6
354,210 + -1.1
354,220 - +0.4
354,232 - +1.2
354,241 - +0.4
354,252 + +1.6
354,297 - -0.7
354,339 - -0.0
354,341 + +0.2
354,360 + -0.7
354,365 + +0.8
354,382 + +0.4
354,411 + -0.5
354,424 - -0.4
354,433 - -1.0
354,514 + +2.3
354,540 + +0.9
354,543 + +0.4
354,552 + +1.2
354,592 + +0.6
354,689 - -0.0
354,713 - -0.8
354,720 - -0.2
354,740 + -0.2
354,814 + +0.3
354,859 - +0.8
354,864 + +0.1
355,155 + 9835 mRNA_1467 0.16 +1.4
355,433 + 9835 mRNA_1467 0.22 +0.9
356,458 + 9835 mRNA_1467 0.45 +1.7
356,610 - 9835 mRNA_1467 0.48 +0.3
356,707 + 9835 mRNA_1467 0.50 +0.6
357,503 + 9835 mRNA_1467 0.68 +0.8
357,512 + 9835 mRNA_1467 0.68 +1.3
357,633 - 9835 mRNA_1467 0.71 -1.4
357,796 + 9835 mRNA_1467 0.74 -0.4
358,063 - 9835 mRNA_1467 0.80 +0.6
358,096 + 9835 mRNA_1467 0.81 +0.9
358,178 + 9835 mRNA_1467 0.83 -0.2
358,816 + -1.3
358,964 + +1.5
359,128 - -1.5
359,131 + -0.5
359,845 - -1.0

Or see this region's nucleotide sequence