Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1470

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9837 and 9838 are separated by 707 nucleotides9838 and 9839 are separated by 253 nucleotides mRNA_1469: 9837 - KOG1200 Mitochondrial/plastidial beta-ketoacyl-ACP reductase, at 366,449 to 367,493 9837 mRNA_1470: 9838 - K18592 GGT1_5, CD224 gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase, at 368,201 to 370,453 9838 mRNA_1471: 9839 - K08874 TRRAP transformation/transcription domain-associated protein, at 370,707 to 382,935 9839

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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367,617 - +2.0
367,619 + +1.1
367,687 + -2.0
367,721 + -0.8
367,721 - +0.1
367,852 - +0.3
367,867 - -1.4
368,014 + -1.4
368,037 + -0.2
368,131 - -0.6
368,146 - +1.5
368,755 + 9838 mRNA_1470 0.25 +0.3
369,024 - 9838 mRNA_1470 0.37 -0.2
369,038 + 9838 mRNA_1470 0.37 -0.2
369,288 - 9838 mRNA_1470 0.48 -0.2
369,499 - 9838 mRNA_1470 0.58 -0.1
369,658 + 9838 mRNA_1470 0.65 +0.8
369,666 - 9838 mRNA_1470 0.65 +1.1
370,035 - 9838 mRNA_1470 0.81 +1.0
370,684 - -0.2

Or see this region's nucleotide sequence