Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1473

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9840 and 9841 are separated by 463 nucleotides9841 and 9842 are separated by 614 nucleotides mRNA_1472: 9840 - HMMPfam-Zinc finger, C3HC4 type (RING finger)-PF00097,ProSitePatterns-Zinc finger RING-type signature.-PS00518,SMART-Ring finger-SM00184,SUPERFAMILY--SSF57850, at 383,411 to 384,622 9840 mRNA_1473: 9841 - KOG0254 Predicted transporter (major facilitator superfamily), at 385,086 to 387,836 9841 mRNA_1474: 9842 - Hypothetical Protein, at 388,451 to 391,356 9842

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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384,529 + -0.0
384,548 + -1.6
384,653 + -1.7
384,694 + +0.5
384,713 + +0.1
384,724 + +0.6
384,777 + -0.9
384,792 - +0.4
384,814 + -0.5
384,914 + -0.2
384,930 + +1.2
384,931 + -0.4
384,938 + -0.0
384,938 + +0.3
384,968 + +0.7
384,974 - -0.1
384,985 + +0.4
384,988 - +1.3
384,991 - -0.5
384,992 + -0.2
384,996 - +0.7
385,005 - +0.4
385,062 + +1.7
385,063 - +0.7
385,070 - +0.4
385,096 - -0.8
385,098 - +0.3
385,099 + -1.0
385,119 - +0.2
385,119 - +1.6
385,119 + +1.2
385,122 + +0.4
385,131 - +0.1
385,133 + +1.4
385,134 - -0.5
385,153 + -0.6
385,219 - +0.1
385,220 - -0.3
385,261 - -1.0
385,268 + +0.3
385,271 - +0.8
385,304 + -2.0
385,398 - 9841 mRNA_1473 0.11 +0.3
385,406 - 9841 mRNA_1473 0.12 -0.8
385,423 - 9841 mRNA_1473 0.12 +0.1
385,916 - 9841 mRNA_1473 0.30 -0.4
385,990 + 9841 mRNA_1473 0.33 +0.1
386,043 + 9841 mRNA_1473 0.35 +0.4
386,162 + 9841 mRNA_1473 0.39 -0.2
386,318 - 9841 mRNA_1473 0.45 -0.5
387,160 - 9841 mRNA_1473 0.75 +1.3
387,475 + 9841 mRNA_1473 0.87 -0.7
387,634 + -0.5
387,636 + -0.1
387,740 + +0.4
387,910 + +0.9
387,940 + -0.7
388,059 - +0.2
388,062 + +1.9
388,064 - +0.6
388,199 - -0.7
388,205 - +0.2
388,219 - +0.0
388,223 - -0.2
388,229 - -0.1
388,229 + +0.7
388,230 + -0.4
388,235 - +0.7
388,235 + +0.6
388,235 + +1.8
388,238 + -0.8
388,240 + +0.7
388,246 + +0.5
388,251 + -0.4
388,255 - -0.5
388,345 + -0.6
388,365 - +0.4
388,388 + +0.6
388,396 + -0.6
388,502 - -0.2
388,670 - +0.5
388,734 - +0.3
388,795 + 9842 mRNA_1474 0.12 -0.1

Or see this region's nucleotide sequence