Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1540

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9907 and 9908 are separated by 263 nucleotides mRNA_1539: 9907 - K13617 PPME1 protein phosphatase methylesterase 1, at 544,104 to 545,858 9907 mRNA_1540: 9908 - K02870 RP-L12e, RPL12 large subunit ribosomal protein L12e, at 546,122 to 547,305 9908

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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545,322 + 9907 mRNA_1539 0.69 -0.9
545,576 - 9907 mRNA_1539 0.84 -0.1
545,580 + 9907 mRNA_1539 0.84 -0.1
545,593 - 9907 mRNA_1539 0.85 -0.2
545,603 + 9907 mRNA_1539 0.85 +0.6
545,708 - +0.9
545,739 + +0.3
545,754 + +0.0
545,754 - -0.8
545,770 + +1.4
545,905 - -0.3
547,673 + -0.6
547,803 - -2.4
547,814 + +0.5
547,949 - +0.3
547,951 + +0.4
548,078 - -0.9
548,084 + -0.6

Or see this region's nucleotide sequence