Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1586

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9953 and 9954 are separated by 154 nucleotides9954 and 9955 are separated by 788 nucleotides mRNA_1585: 9953 - K00916 CTK1 CTD kinase subunit alpha, at 659,402 to 660,723 9953 mRNA_1586: 9954 - BLAST ribosomal protein [Moniliophthora roreri MCA 2997], at 660,878 to 663,649 9954 mRNA_1587: 9955 - HMMPfam-Protein of unknown function (DUF3759)-PF12585, at 664,438 to 664,902 9955

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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663,781 - -0.0
663,802 + +0.9
663,814 - +0.3
663,889 - +1.6
664,160 - -1.5
664,200 + +1.3
664,212 - +1.3
664,213 - -0.6
664,272 + -0.3
664,322 - -0.1
664,324 + +0.3
664,353 - -0.1
664,364 + -1.4
664,370 + -0.2
664,441 - +0.2
664,530 - 9955 mRNA_1587 0.20 -0.2
664,551 - 9955 mRNA_1587 0.24 -0.5

Or see this region's nucleotide sequence