Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1614

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9981 and 9982 are separated by 90 nucleotides9982 and 9983 are separated by 468 nucleotides mRNA_1613: 9981 - K01228 GCS1 mannosyl-oligosaccharide glucosidase, at 719,549 to 722,839 9981 mRNA_1614: 9982 - KOG2819 Uncharacterized conserved protein, at 722,930 to 724,798 9982 mRNA_1615: 9983 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 725,267 to 727,926 9983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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722,132 - 9981 mRNA_1613 0.78 +0.2
722,273 - 9981 mRNA_1613 0.83 +0.1
722,605 - +0.3
722,743 + +1.7
722,884 + +1.3
723,005 - -0.4
723,025 + -0.4
723,030 - +0.0
723,033 + +1.2
723,127 + 9982 mRNA_1614 0.11 +0.7
723,176 - 9982 mRNA_1614 0.13 +0.7
724,021 + 9982 mRNA_1614 0.58 +0.8
724,337 - 9982 mRNA_1614 0.75 -0.2
724,769 - +0.9
725,242 + +0.3
725,419 + -0.4
725,560 - 9983 mRNA_1615 0.11 -0.3

Or see this region's nucleotide sequence