Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1615

Experiment: 40 hrs Low Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 9982 and 9983 are separated by 468 nucleotides mRNA_1614: 9982 - KOG2819 Uncharacterized conserved protein, at 722,930 to 724,798 9982 mRNA_1615: 9983 - K03283 HSPA1_8 heat shock 70kDa protein 1/8, at 725,267 to 727,926 9983

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Low Buoyancy
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724,337 - 9982 mRNA_1614 0.75 -0.2
724,769 - +0.9
725,242 + +0.3
725,419 + -0.4
725,560 - 9983 mRNA_1615 0.11 -0.3
728,045 + -0.1
728,060 + -0.2
728,073 - -0.5
728,074 + -1.2
728,074 + -1.0
728,077 + -0.6
728,080 + -0.1
728,088 + -0.1
728,090 + +2.1
728,096 - +0.0
728,097 + +0.1
728,097 - +0.5
728,112 + +0.6
728,235 - +1.0
728,243 - +0.4
728,246 + +0.1
728,271 + -0.3
728,288 + -0.4
728,569 + +0.2
728,676 + -0.5
728,681 + -0.1
728,702 - +0.5
728,838 - +1.7

Or see this region's nucleotide sequence