Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1632

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10000 and 10001 are separated by 740 nucleotides mRNA_1632: 10000 - K00036 G6PD, zwf glucose-6-phosphate 1-dehydrogenase, at 760,062 to 761,705 10000 mRNA_1633: 10001 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 762,446 to 764,135 10001

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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759,158 + +1.1
759,159 - +0.2
759,175 - +0.1
759,178 - -1.1
759,184 - -0.8
759,186 - +0.0
759,188 - +0.3
759,193 - -0.1
759,197 - +0.5
759,203 + +0.4
761,918 - +0.5
761,932 - +0.8
761,940 + -0.1
761,963 + -0.3
762,101 + -0.6
762,235 - -0.3
762,240 - +1.5
762,250 + -0.1
762,282 - -0.7
762,295 + +0.9

Or see this region's nucleotide sequence