Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1683

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10050 and 10051 are separated by 588 nucleotides10051 and 10052 are separated by 227 nucleotides mRNA_1682: 10050 - Hypothetical Protein, at 881,676 to 882,111 10050 mRNA_1683: 10051 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 882,700 to 883,622 10051 mRNA_1684: 10052 - Hypothetical Protein, at 883,850 to 884,776 10052

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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881,752 + 10050 mRNA_1682 0.17 +0.4
881,876 + 10050 mRNA_1682 0.46 +0.5
881,880 + 10050 mRNA_1682 0.47 +0.4
882,473 + +0.3
882,473 + +0.4
882,477 - +0.5
882,487 - +0.4
882,490 - +0.4
882,491 + +0.7
883,171 - 10051 mRNA_1683 0.51 +0.4
883,189 - 10051 mRNA_1683 0.53 -1.9
883,788 - +0.2
883,818 + +0.3
883,935 - +0.6
883,956 + 10052 mRNA_1684 0.11 +0.7
884,091 - 10052 mRNA_1684 0.26 +0.5

Or see this region's nucleotide sequence