Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1728

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10095 and 10096 are separated by 439 nucleotides10096 and 10097 are separated by 472 nucleotides mRNA_1727: 10095 - K03843 ALG2 alpha-1,3/alpha-1,6-mannosyltransferase, at 53,103 to 55,256 10095 mRNA_1728: 10096 - HMMPfam-Fungal specific transcription factor domain-PF04082,SMART-Fungal specific transcription factor domain-SM00906, at 55,696 to 58,007 10096 mRNA_1729: 10097 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 58,480 to 59,986 10097

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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55,207 + -0.9
55,218 + -0.2
55,247 + +2.2
55,250 - +0.0
55,255 + +1.1
55,362 - -0.1
55,532 + -0.0
55,655 - +0.8
55,795 - +2.6
55,808 + -0.9
55,958 - 10096 mRNA_1728 0.11 +1.1
56,082 + 10096 mRNA_1728 0.17 -0.0
56,091 + 10096 mRNA_1728 0.17 +1.0
56,195 - 10096 mRNA_1728 0.22 +0.1
56,250 + 10096 mRNA_1728 0.24 +0.9
56,546 - 10096 mRNA_1728 0.37 +1.0
56,815 - 10096 mRNA_1728 0.48 +0.3
57,116 - 10096 mRNA_1728 0.61 -0.1
57,321 - 10096 mRNA_1728 0.70 -0.6
57,702 - 10096 mRNA_1728 0.87 +0.2
57,979 - +0.8
58,434 + -0.9
58,702 + 10097 mRNA_1729 0.15 +0.5

Or see this region's nucleotide sequence