Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1748

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10115 and 10116 are separated by 477 nucleotides10116 and 10117 are separated by 543 nucleotides mRNA_1747: 10115 - Hypothetical Protein, at 106,989 to 107,598 10115 mRNA_1748: 10116 - HMMPfam-Oxidoreductase family, NAD-binding Rossmann fold-PF01408,HMMPfam-Putative oxidoreductase C terminal-PF08635,SUPERFAMILY--SSF51735,SUPERFAMILY--SSF55347, at 108,076 to 110,507 10116 mRNA_1749: 10117 - Hypothetical Protein, at 111,051 to 112,240 10117

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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107,368 - 10115 mRNA_1747 0.62 +0.5
107,437 - 10115 mRNA_1747 0.73 -0.2
107,453 + 10115 mRNA_1747 0.76 +0.7
107,563 - +1.3
107,584 + +0.3
107,730 - +0.1
107,757 - -0.5
107,781 - +0.4
107,819 + +0.2
108,057 - -0.4
108,058 + +0.2
108,398 + 10116 mRNA_1748 0.13 +0.6
108,807 + 10116 mRNA_1748 0.30 +0.2
108,983 + 10116 mRNA_1748 0.37 +0.9
109,077 - 10116 mRNA_1748 0.41 +0.6
109,351 + 10116 mRNA_1748 0.52 +0.2
109,812 + 10116 mRNA_1748 0.71 +0.9
109,849 + 10116 mRNA_1748 0.73 -0.0
109,968 + 10116 mRNA_1748 0.78 +0.4
110,213 - 10116 mRNA_1748 0.88 -0.1
110,232 + 10116 mRNA_1748 0.89 +0.5
110,385 - +0.7
110,540 - +1.1
110,567 + +0.6
110,689 - -2.1
110,716 - +0.3
110,724 - -0.2
110,724 + +0.9
110,731 + +0.0
110,761 - +0.2
110,778 + -0.1
110,843 + +1.4
110,861 - +0.6
110,878 + -0.3
110,928 + +1.0
110,947 - +0.3
111,000 + +0.5
111,027 - -0.2
111,038 - -0.3
111,197 + 10117 mRNA_1749 0.12 +0.2

Or see this region's nucleotide sequence