Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1766

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10134 and 10135 are separated by 364 nucleotides mRNA_1766: 10134 - K03097 CSNK2A casein kinase II subunit alpha, at 151,982 to 154,408 10134 mRNA_1767: 10135 - HMMPfam-F-box-like-PF12937, at 154,773 to 156,142 10135

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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151,019 - -0.2
151,027 - +0.4
151,035 + +0.1
151,129 + +1.0
151,146 + +0.3
151,157 + +0.7
151,163 + -0.1
151,168 + +0.1
151,545 + +0.2
151,566 + -0.7
151,566 - -0.2
151,595 + +0.9
151,748 + +1.7
151,749 - +0.9
151,896 + -1.7
151,907 + +0.2
151,912 + -0.8
152,169 - +0.9
152,183 - +0.5
152,200 + +0.3
152,767 + 10134 mRNA_1766 0.32 -2.4
152,782 - 10134 mRNA_1766 0.33 +0.5
153,058 - 10134 mRNA_1766 0.44 -0.0
153,247 - 10134 mRNA_1766 0.52 +0.7
153,254 + 10134 mRNA_1766 0.52 -0.4
153,351 + 10134 mRNA_1766 0.56 +0.5
153,649 - 10134 mRNA_1766 0.69 +0.5
153,823 + 10134 mRNA_1766 0.76 -0.3
153,876 + 10134 mRNA_1766 0.78 -0.2
153,942 + 10134 mRNA_1766 0.81 -1.2
154,279 - -1.4
154,316 + +0.0
154,510 + +0.3
154,553 - +0.7
154,553 - +0.6
154,553 - +1.8
154,634 + +0.8
154,640 + +0.3
154,676 - +1.3
154,984 - 10135 mRNA_1767 0.15 +0.7
155,128 - 10135 mRNA_1767 0.26 +0.5

Or see this region's nucleotide sequence