Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1795

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10162 and 10163 are separated by 182 nucleotides10163 and 10164 are separated by 214 nucleotides mRNA_1794: 10162 - BLAST peroxisomal membrane anchor protein [Aspergillus ..., at 216,016 to 217,175 10162 mRNA_1795: 10163 - K12844 PRPF31 U4/U6 small nuclear ribonucleoprotein PRP31, at 217,358 to 219,404 10163 mRNA_1796: 10164 - K10878 SPO11 meiotic recombination protein SPO11, at 219,619 to 222,270 10164

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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216,728 - 10162 mRNA_1794 0.61 +1.8
216,769 - 10162 mRNA_1794 0.65 -0.2
216,914 + 10162 mRNA_1794 0.77 -0.2
217,141 - +0.3
217,147 - -0.2
219,243 + +0.2
219,552 - -0.2
219,861 + -0.8
219,868 + -0.2
220,123 + 10164 mRNA_1796 0.19 +0.5
220,195 - 10164 mRNA_1796 0.22 +0.3

Or see this region's nucleotide sequence