Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1806

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10173 and 10174 are separated by 589 nucleotides mRNA_1805: 10173 - K00616 E2.2.1.2, talA, talB transaldolase, at 244,188 to 245,888 10173 mRNA_1806: 10174 - BLAST related to C2H2 zinc finger protein [Ustilago hordei], at 246,478 to 247,533 10174

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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245,950 - +0.1
246,034 + +0.3
246,063 - +1.1
246,068 - +0.0
246,069 + +1.2
246,092 + +0.6
246,094 + +0.4
246,094 + +0.4
246,097 - -0.2
246,098 + +0.7
246,101 - +0.8
246,103 + +0.3
246,110 + -0.1
246,228 + -1.5
246,379 - +1.4
246,396 + +0.7
246,522 - +0.1
246,644 - 10174 mRNA_1806 0.16 -0.5
247,013 - 10174 mRNA_1806 0.51 -0.2
247,151 - 10174 mRNA_1806 0.64 +1.7
247,276 + 10174 mRNA_1806 0.76 +0.2
247,426 + 10174 mRNA_1806 0.90 -1.4
247,552 - -0.2
247,891 - -1.4
248,000 + +1.7
248,260 + -0.2
248,499 - +0.2

Or see this region's nucleotide sequence