Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1820

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10187 and 10188 are separated by 527 nucleotides10188 and 10189 are separated by 32 nucleotides mRNA_1819: 10187 - K09215 OSR, ODD odd-skipped, at 287,876 to 290,451 10187 mRNA_1820: 10188 - Hypothetical Protein, at 290,979 to 291,681 10188 mRNA_1821: 10189 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,HMMPfam-Protein of unknown function (Ytp1)-PF10355, at 291,714 to 294,112 10189

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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290,007 - 10187 mRNA_1819 0.83 +2.4
290,340 + +1.5
290,518 - +1.8
290,661 - -0.3
290,665 - +0.6
290,806 + +0.6
290,952 - +0.4
291,258 - 10188 mRNA_1820 0.40 +0.9
291,269 - 10188 mRNA_1820 0.41 +0.5
291,271 - 10188 mRNA_1820 0.42 +1.0
291,275 - 10188 mRNA_1820 0.42 +0.6
291,276 - 10188 mRNA_1820 0.42 +0.5
291,278 + 10188 mRNA_1820 0.43 +0.5
291,281 - 10188 mRNA_1820 0.43 +2.7
291,283 + 10188 mRNA_1820 0.43 +0.8
291,283 - 10188 mRNA_1820 0.43 -0.1
291,289 + 10188 mRNA_1820 0.44 +0.1
291,289 + 10188 mRNA_1820 0.44 -1.0
291,290 - 10188 mRNA_1820 0.44 -1.5
291,297 + 10188 mRNA_1820 0.45 -1.2
291,299 + 10188 mRNA_1820 0.46 -0.1
291,300 - 10188 mRNA_1820 0.46 +0.6
291,317 - 10188 mRNA_1820 0.48 +1.3
291,349 + 10188 mRNA_1820 0.53 +0.2
291,352 - 10188 mRNA_1820 0.53 +0.6
291,358 - 10188 mRNA_1820 0.54 +0.2
291,370 + 10188 mRNA_1820 0.56 +0.2
291,371 + 10188 mRNA_1820 0.56 +1.1
291,416 - 10188 mRNA_1820 0.62 +0.1
291,416 + 10188 mRNA_1820 0.62 +0.8
291,437 + 10188 mRNA_1820 0.65 +0.5
291,438 + 10188 mRNA_1820 0.65 +0.4
291,520 + 10188 mRNA_1820 0.77 +1.1
291,552 - 10188 mRNA_1820 0.82 -0.1
291,557 - 10188 mRNA_1820 0.82 -0.0
291,581 + 10188 mRNA_1820 0.86 +0.7
291,582 - 10188 mRNA_1820 0.86 -0.0
291,587 + 10188 mRNA_1820 0.86 -0.1
291,596 + 10188 mRNA_1820 0.88 +0.6
291,601 + 10188 mRNA_1820 0.88 +0.5
291,620 - -0.1
291,762 - +0.6
291,781 - +0.2
291,799 - +0.4
291,933 - -0.1
291,962 - 10189 mRNA_1821 0.10 -0.3
292,036 - 10189 mRNA_1821 0.13 +0.2
292,042 - 10189 mRNA_1821 0.14 -0.1
292,049 + 10189 mRNA_1821 0.14 +0.7
292,064 - 10189 mRNA_1821 0.15 +2.0
292,222 - 10189 mRNA_1821 0.21 +1.3
292,240 + 10189 mRNA_1821 0.22 +1.1
292,380 - 10189 mRNA_1821 0.28 +0.4
292,403 - 10189 mRNA_1821 0.29 +0.0
292,501 - 10189 mRNA_1821 0.33 +1.0

Or see this region's nucleotide sequence