Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1830

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10197 and 10198 are separated by 279 nucleotides10198 and 10199 are separated by 295 nucleotides mRNA_1829: 10197 - K20238 E2.1.1.317 sphingolipid C9-methyltransferase, at 314,887 to 317,031 10197 mRNA_1830: 10198 - K00809 DHPS, dys deoxyhypusine synthase, at 317,311 to 318,689 10198 mRNA_1831: 10199 - KOG3274 Uncharacterized conserved protein, AMMECR1, at 318,985 to 319,920 10199

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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317,058 - +0.2
317,077 - -0.1
317,081 - +0.2
318,870 - +0.3
318,954 - +0.8
318,955 + +0.2
318,961 - +0.3
318,978 + +0.1
319,117 - 10199 mRNA_1831 0.14 -0.4
319,248 - 10199 mRNA_1831 0.28 -0.1
319,554 + 10199 mRNA_1831 0.61 +0.1
319,679 + 10199 mRNA_1831 0.74 +1.1

Or see this region's nucleotide sequence