Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1840

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10207 and 10208 are separated by 385 nucleotides mRNA_1839: 10207 - Hypothetical Protein, at 337,728 to 339,625 10207 mRNA_1840: 10208 - Hypothetical Protein, at 340,011 to 340,722 10208

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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339,113 - 10207 mRNA_1839 0.73 +0.1
339,387 - 10207 mRNA_1839 0.87 +0.8
339,411 + 10207 mRNA_1839 0.89 +0.5
339,724 + +1.9
339,862 - +0.2
339,880 - -0.1
339,882 + +0.3
339,999 + -1.0
340,444 + 10208 mRNA_1840 0.61 -0.2
340,604 - 10208 mRNA_1840 0.83 -0.1
340,763 - +0.6
340,880 - +0.4
340,915 - +0.7
341,009 - -1.1
341,048 + -0.0
341,049 - +0.4
341,056 + +0.6
341,320 - +0.4
341,333 + +0.3
341,338 - +0.4
341,350 - +1.2
341,466 - +0.3
341,488 + +1.6
341,570 + +0.3
341,600 + -0.4
341,608 + +0.4
341,609 - +0.4
341,610 + +0.9
341,618 + +0.6
341,629 - +0.0
341,640 + +0.5
341,666 + -0.1
341,666 + +0.6
341,668 + +2.8
341,670 - +0.5
341,692 + +0.2
341,708 - +0.5
341,718 + -0.2

Or see this region's nucleotide sequence