Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1841

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10209 and 10210 are separated by 579 nucleotides mRNA_1841: 10209 - KOG4476 Gluconate transport-inducing protein, at 342,756 to 344,236 10209 mRNA_1842: 10210 - K08660 CNDP2 cytosolic nonspecific dipeptidase, at 344,816 to 347,199 10210

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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341,780 - +1.6
341,783 + +0.1
341,788 + +1.6
341,790 - +0.1
341,796 - -0.2
341,824 - +0.4
341,825 - +0.8
341,846 - -1.1
341,847 + +0.4
341,849 - +0.2
341,853 - +0.8
341,857 + +0.3
341,866 + +0.0
341,868 - +0.5
341,869 + -0.0
341,871 + -0.1
341,880 + +0.4
341,889 - -0.4
341,889 + +0.1
341,889 - +0.4
341,892 + +0.5
341,892 + -0.4
341,892 + -0.0
341,904 - +1.0
341,908 - +1.4
341,908 - +0.3
341,908 - -0.3
341,908 + -0.2
341,909 - -0.2
341,909 + -0.1
341,911 + -0.2
341,911 + +0.4
341,916 + +1.1
341,921 - +0.1
341,922 + +0.1
341,924 - -0.3
341,924 + -0.0
341,925 + -0.3
341,928 + +0.2
341,942 - +0.7
341,952 - +0.5
341,969 + -0.1
341,974 + -0.3
341,993 + -0.1
341,994 + +1.7
342,016 - +0.4
342,018 - -1.1
342,025 - +1.2
342,027 + +0.5
342,029 + +1.9
342,034 - +0.1
342,054 - -0.2
342,071 + -0.2
342,076 + +0.4
342,082 + -0.1
342,090 - +1.2
342,097 - +0.3
342,099 + -0.5
342,108 + +0.4
342,122 - +0.5
342,141 - +0.7
342,142 + +1.6
342,155 - +0.8
342,160 + +2.0
342,160 + +1.4
342,175 + +0.3
342,175 + +1.5
342,187 - -0.6
342,222 + -0.4
342,238 + -0.1
342,239 - -0.3
342,240 + +0.3
342,254 + +1.0
342,269 - -0.0
342,370 - -0.1
342,371 - -0.2
342,374 + +1.7
342,376 + +1.0
342,381 + -0.1
342,383 + -0.4
342,386 - +0.3
342,390 - +0.2
342,392 + -0.1
342,394 + +1.3
342,396 - +1.5
342,398 - -0.4
342,400 + +0.3
342,422 + +0.3
342,425 - +0.9
342,437 - -0.1
342,438 - -0.2
342,449 - +0.6
342,450 - +1.2
342,451 - +0.1
342,455 - -1.2
342,458 + -0.1
342,458 + +0.4
342,463 - +0.4
342,467 - +2.0
342,468 + -0.2
342,475 + +1.8
342,482 - -0.3
342,486 - +0.3
342,491 + +0.7
342,493 - +0.2
342,506 + -0.1
342,514 + +1.1
342,519 - +0.5
342,528 + +0.8
342,531 - -0.7
342,531 + +0.2
342,554 + +0.4
342,562 + -0.2
342,566 - +2.7
342,566 + +0.2
342,577 + +0.4
342,577 + +1.0
342,605 - +0.2
342,609 - +0.3
342,621 - +0.1
342,627 - +0.4
342,637 - +0.3
342,702 - +0.4
342,708 - -0.4
342,803 + +0.5
342,808 - -0.1
342,815 - +0.1
342,818 + +1.8
342,824 + +0.5
342,826 + +0.6
342,840 + +0.2
342,861 + +0.4
342,975 + 10209 mRNA_1841 0.15 -0.2
343,087 - 10209 mRNA_1841 0.22 +0.4
343,121 + 10209 mRNA_1841 0.25 +0.2
343,140 + 10209 mRNA_1841 0.26 +0.3
343,284 - 10209 mRNA_1841 0.36 +0.8
343,296 + 10209 mRNA_1841 0.36 +0.7
343,539 + 10209 mRNA_1841 0.53 +0.6
343,715 - 10209 mRNA_1841 0.65 +1.7
344,164 - +0.3
344,262 - +1.0
344,331 - -0.3
344,560 - +1.4
344,567 + -0.8
344,583 - -0.8
344,590 - -0.4
344,610 - +1.1
344,643 - +0.5
344,653 + -0.2
344,691 + +0.5
344,693 - +1.7
344,704 + +0.3
344,704 - +1.5
344,727 + -0.6
344,748 + +0.7
344,863 - +0.6
345,015 + -0.2
345,034 - +0.3

Or see this region's nucleotide sequence