Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1864

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10231 and 10232 are separated by 382 nucleotides10232 and 10233 are separated by 214 nucleotides mRNA_1863: 10231 - HMMPfam-Metallo-beta-lactamase superfamily-PF00753,SMART-Metallo-beta-lactamase superfamily-SM00849,SUPERFAMILY--SSF56281, at 396,893 to 397,973 10231 mRNA_1864: 10232 - SUPERFAMILY--SSF53300, at 398,356 to 399,523 10232 mRNA_1865: 10233 - K02729 PSMA5 20S proteasome subunit alpha 5, at 399,738 to 401,124 10233

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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397,370 - 10231 mRNA_1863 0.44 +0.1
397,669 + 10231 mRNA_1863 0.72 +1.5
397,787 - 10231 mRNA_1863 0.83 +0.9
397,965 + -0.0
397,972 - +0.8
397,980 - +0.5
397,988 - -0.2
398,095 + +0.1
398,105 - -0.1
398,116 + -2.4
398,117 - +0.4
398,119 + -0.2
398,134 + -0.6
398,172 + +0.1
398,299 + -0.2
398,527 + 10232 mRNA_1864 0.15 -0.5
398,694 + 10232 mRNA_1864 0.29 -0.7
398,720 - 10232 mRNA_1864 0.31 +1.1
399,619 + -0.1
399,626 + -1.0
399,631 + -0.6
399,697 - -0.2

Or see this region's nucleotide sequence