Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1870

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10237 and 10238 are separated by 519 nucleotides10238 and 10239 are separated by 49 nucleotides mRNA_1869: 10237 - K14570 REX1, REXO1, RNH70 RNA exonuclease 1, at 404,642 to 406,231 10237 mRNA_1870: 10238 - K18043 OCA1 tyrosine-protein phosphatase OCA1, at 406,751 to 407,606 10238 mRNA_1871: 10239 - K14855 RSA4, NLE1 ribosome assembly protein 4, at 407,656 to 409,995 10239

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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406,521 - +0.1
406,541 + +1.7
406,657 - +0.2
406,689 - -0.3
406,704 - +0.3
406,706 + +0.0
406,972 + 10238 mRNA_1870 0.26 +0.6
407,587 - -0.3
407,733 + +0.5

Or see this region's nucleotide sequence