Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1874

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10241 and 10242 are separated by 151 nucleotides10242 and 10243 are separated by 276 nucleotides mRNA_1873: 10241 - BLAST Rab geranylgeranyltransferase [Mycena chlorophos], at 411,554 to 414,002 10241 mRNA_1874: 10242 - BLAST midasin [Pseudozyma hubeiensis SY62], at 414,154 to 415,207 10242 mRNA_1875: 10243 - Hypothetical Protein, at 415,484 to 416,261 10243

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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413,359 - 10241 mRNA_1873 0.74 +1.9
413,364 - 10241 mRNA_1873 0.74 +0.3
413,474 + 10241 mRNA_1873 0.78 +0.5
413,481 - 10241 mRNA_1873 0.79 -0.0
413,785 + -0.4
413,929 - -0.1
413,948 + -0.1
414,068 - +0.4
414,103 + -0.3
414,108 - -0.7
414,117 + -0.3
414,124 + +0.9
414,241 - +1.7
414,249 - +1.2
414,253 + -0.7
414,256 + +0.4
414,414 + 10242 mRNA_1874 0.25 +1.2
414,524 + 10242 mRNA_1874 0.35 +1.6
414,555 - 10242 mRNA_1874 0.38 +1.0
414,705 - 10242 mRNA_1874 0.52 +0.1
414,834 - 10242 mRNA_1874 0.65 -0.1
414,841 + 10242 mRNA_1874 0.65 -0.7
414,977 - 10242 mRNA_1874 0.78 -0.4
415,721 + 10243 mRNA_1875 0.30 +0.4

Or see this region's nucleotide sequence