Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1900

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10267 and 10268 are separated by 278 nucleotides10268 and 10269 are separated by 324 nucleotides mRNA_1899: 10267 - K14946 RBFOX, FOX RNA binding protein fox-1, at 462,869 to 464,416 10267 mRNA_1900: 10268 - K15071 RCY1, POF6 recyclin-1, at 464,695 to 468,117 10268 mRNA_1901: 10269 - HMMPfam-Spo7-like protein-PF03907, at 468,442 to 470,059 10269

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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463,748 - 10267 mRNA_1899 0.57 +1.4
463,748 - 10267 mRNA_1899 0.57 +0.3
464,132 - 10267 mRNA_1899 0.82 +0.2
464,274 - -0.4
464,583 + +0.9
464,940 - +0.2
464,984 - +1.6
465,036 + +0.1
465,347 + 10268 mRNA_1900 0.19 +1.8
465,455 - 10268 mRNA_1900 0.22 -1.4
465,753 + 10268 mRNA_1900 0.31 -0.5
466,444 + 10268 mRNA_1900 0.51 +0.7
467,341 - 10268 mRNA_1900 0.77 -0.4
467,464 + 10268 mRNA_1900 0.81 +0.7
467,570 + 10268 mRNA_1900 0.84 +0.8
467,590 + 10268 mRNA_1900 0.85 +0.2
467,733 - 10268 mRNA_1900 0.89 +0.2
468,105 - +1.0
468,209 + -1.3
468,247 - +0.2
468,373 - +0.2
468,375 + +0.1
468,382 + +0.1
468,383 - +0.3

Or see this region's nucleotide sequence