Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1904

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 10271 and 10272 are separated by 745 nucleotides10272 and 10273 are separated by 205 nucleotides mRNA_1903: 10271 - HMMPfam-Sfi1 spindle body protein-PF08457, at 474,303 to 478,311 10271 mRNA_1904: 10272 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 479,057 to 480,594 10272 mRNA_1905: 10273 - Hypothetical Protein, at 480,800 to 481,665 10273

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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478,198 - +0.1
478,730 - -0.7
479,113 + +0.3
479,278 + 10272 mRNA_1904 0.14 +0.3
479,284 - 10272 mRNA_1904 0.15 -0.3
479,547 + 10272 mRNA_1904 0.32 -0.5
479,689 + 10272 mRNA_1904 0.41 +0.6
479,861 + 10272 mRNA_1904 0.52 -0.2
480,169 + 10272 mRNA_1904 0.72 +1.5
480,416 + 10272 mRNA_1904 0.88 +0.3
480,691 - -0.7
480,696 + -0.5
480,706 + -0.4
480,715 + -0.4
480,723 + -0.3
480,820 + +0.6
480,831 - +0.1
480,841 + +0.6
480,841 + +0.8
480,857 + -0.0
480,905 + 10273 mRNA_1905 0.12 +0.7
480,930 - 10273 mRNA_1905 0.15 +0.5
480,938 + 10273 mRNA_1905 0.16 -0.4
480,976 + 10273 mRNA_1905 0.20 +0.1
480,982 - 10273 mRNA_1905 0.21 +0.3
480,997 + 10273 mRNA_1905 0.23 +0.6
481,054 + 10273 mRNA_1905 0.29 +0.1
481,093 + 10273 mRNA_1905 0.34 -0.4
481,106 + 10273 mRNA_1905 0.35 +0.1
481,107 - 10273 mRNA_1905 0.35 -0.2
481,113 + 10273 mRNA_1905 0.36 +0.2
481,114 + 10273 mRNA_1905 0.36 +0.1
481,129 - 10273 mRNA_1905 0.38 -0.4
481,132 + 10273 mRNA_1905 0.38 -0.3
481,135 + 10273 mRNA_1905 0.39 +0.4
481,135 + 10273 mRNA_1905 0.39 +0.6
481,158 + 10273 mRNA_1905 0.41 +0.2
481,170 - 10273 mRNA_1905 0.43 +0.6
481,190 + 10273 mRNA_1905 0.45 -0.3
481,202 + 10273 mRNA_1905 0.46 -0.4
481,213 + 10273 mRNA_1905 0.48 +1.9
481,220 + 10273 mRNA_1905 0.48 +0.7
481,235 - 10273 mRNA_1905 0.50 +0.4
481,236 + 10273 mRNA_1905 0.50 +0.1
481,244 + 10273 mRNA_1905 0.51 +0.5
481,314 - 10273 mRNA_1905 0.59 +0.8
481,315 + 10273 mRNA_1905 0.59 +0.2
481,334 + 10273 mRNA_1905 0.62 +0.3
481,378 - 10273 mRNA_1905 0.67 +1.7
481,384 + 10273 mRNA_1905 0.67 +0.4
481,399 - 10273 mRNA_1905 0.69 +1.1
481,403 - 10273 mRNA_1905 0.70 -0.0
481,425 - 10273 mRNA_1905 0.72 +0.4
481,432 + 10273 mRNA_1905 0.73 +0.3
481,439 + 10273 mRNA_1905 0.74 -0.1
481,453 - 10273 mRNA_1905 0.75 -0.0
481,454 + 10273 mRNA_1905 0.76 +0.6
481,455 - 10273 mRNA_1905 0.76 -0.3
481,458 + 10273 mRNA_1905 0.76 +1.1
481,465 - 10273 mRNA_1905 0.77 +0.9
481,468 + 10273 mRNA_1905 0.77 +0.4
481,469 + 10273 mRNA_1905 0.77 +0.0
481,485 + 10273 mRNA_1905 0.79 -1.0
481,489 - 10273 mRNA_1905 0.80 -1.0
481,501 - 10273 mRNA_1905 0.81 +1.5
481,536 + 10273 mRNA_1905 0.85 +0.1
481,549 - 10273 mRNA_1905 0.86 +0.7

Or see this region's nucleotide sequence