Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1928

Experiment: 40 hrs Median Buoyancy

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_1928: 10296 - Hypothetical Protein, at 534,297 to 534,878 10296

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Per-strain Table

Position Strand Gene Sysname Fraction 40 hrs Median Buoyancy
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533,297 + +0.2
533,299 - -0.5
533,316 - +0.2
533,346 - +0.3
533,439 - -0.0
533,449 - -0.0
533,452 - +0.6
533,460 - +0.1
533,465 + +0.3
533,467 - -0.4
533,471 - -0.2
533,476 - -0.6
533,479 - +0.8
533,577 + +0.3
533,582 - +0.0
533,586 - +0.1
533,590 + +0.2
533,591 + +1.1
533,600 - +0.2
533,615 - +0.5
533,617 - +1.1
533,619 + +0.4
533,621 + -0.2
533,621 + +0.2
533,624 + -0.5
533,628 + +2.1
533,650 - -0.1
533,665 - +0.7
533,671 - +0.1
533,675 + +0.3
533,677 + +0.6
533,677 - -0.0
533,677 - +0.4
533,678 - +0.3
533,680 + +0.5
533,682 - -0.1
533,687 + +1.0
533,696 - +0.6
533,699 - +0.4
533,700 + +0.6
533,701 + +0.1
533,704 + +0.4
533,705 - +0.1
533,717 - +0.2
533,721 - +0.7
533,721 + -0.6
533,722 + +0.5
533,722 + -0.1
533,765 + +0.1
533,783 + +1.4
533,792 + +0.1
533,793 - +0.3
533,814 + -0.6
533,816 - -0.1
533,822 + +1.1
533,828 - -0.2
533,843 + +1.0
533,844 - +1.1
533,855 + -0.5
533,863 + +1.9
533,864 - +0.5
533,868 + +0.5
533,879 + -0.2
533,880 - +0.6
533,892 + +0.9
533,897 + -0.2
533,897 + +0.0
533,899 + +0.1
533,903 + -0.3
533,904 + +0.7
533,905 + +0.4
533,927 - -0.2
533,931 + +1.4
533,936 + +0.9
533,938 + +0.8
533,941 + +0.3
533,957 + +0.4
534,017 - +0.0
534,017 - -0.0
534,033 + -0.0
534,047 + -0.6
534,049 - +1.3
534,053 - -1.4
534,056 + +0.8
534,057 + +1.9
534,062 - +0.7
534,063 + +0.0
534,066 + +1.7
534,069 + +0.8
534,072 + +0.4
534,075 - +0.5
534,077 - +0.8
534,077 - +0.2
534,081 + +1.2
534,086 - -0.5
534,088 - +0.4
534,091 + -1.8
534,093 - -0.3
534,095 - +0.5
534,096 + -1.1
534,101 + +0.7
534,110 + +0.3
534,229 + +1.3
534,236 - +0.1
534,238 - -0.2
534,247 - +0.5
534,249 + -0.4
534,255 + +1.1
534,262 + +0.6
534,262 + +1.1
534,273 + +0.2
534,278 + +0.2
534,370 - 10296 mRNA_1928 0.13 +0.5
534,381 - 10296 mRNA_1928 0.14 -0.1
534,386 - 10296 mRNA_1928 0.15 +0.8
534,388 - 10296 mRNA_1928 0.16 +0.8
534,398 + 10296 mRNA_1928 0.17 +0.5
534,401 - 10296 mRNA_1928 0.18 +0.2
534,407 - 10296 mRNA_1928 0.19 -0.3
534,409 + 10296 mRNA_1928 0.19 -0.1
534,418 + 10296 mRNA_1928 0.21 +0.9
534,425 - 10296 mRNA_1928 0.22 -2.2
534,525 - 10296 mRNA_1928 0.39 +1.1
534,535 - 10296 mRNA_1928 0.41 +0.4
534,538 - 10296 mRNA_1928 0.41 +1.0
534,551 - 10296 mRNA_1928 0.44 -1.1
534,556 + 10296 mRNA_1928 0.45 +0.1
534,580 - 10296 mRNA_1928 0.49 +1.1
534,693 + 10296 mRNA_1928 0.68 -0.6
534,703 + 10296 mRNA_1928 0.70 +1.2
534,858 + -0.2
534,994 + -0.0
535,132 - +0.5
535,307 - +0.2
535,312 + +0.8
535,441 - -0.5
535,581 - +0.4
535,581 + -0.7
535,605 + +0.5
535,716 - +1.5
535,726 - +0.9
535,732 - +0.1
535,733 + +0.3
535,740 + -0.4
535,745 - +0.8
535,745 - +1.2
535,755 + -1.1
535,755 + +0.0
535,757 - +0.3
535,760 - +0.4
535,799 - +0.7

Or see this region's nucleotide sequence